Gut Microbiota Gut Microbiata NCBI ID Gut Microbiota ID Classification Substrate Substrate PubChem CID Substrate HMDB ID Substrate ChEBI ID Metabolite Metabolite PubChem CID Metabolite HMDB ID Metabolite ChEBI ID Oscillibacter 459786 gm0484 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Phenylalanine 6140 HMDB0000159 CHEBI:17295 Oscillibacter 459786 gm0484 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Glutamic acid 33032 HMDB0000148 CHEBI:16015 Oscillibacter 459786 gm0484 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 3-Phenylpropionic acid 107 HMDB0000764 CHEBI:28631 Oscillibacter 459786 gm0484 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Cholic acid 221493 HMDB0000619 CHEBI:16359 Oscillibacter 459786 gm0484 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Eicosapentaenoic acid 446284 HMDB0001999 CHEBI:28364 Oscillibacter 459786 gm0484 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Chenodeoxycholic acid 10133 HMDB0000518 CHEBI:16755 Oscillibacter 459786 gm0484 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Desoxycortone 6166 HMDB0000016 CHEBI:16973 Oscillibacter 459786 gm0484 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 7-Dehydrocholesterol 439423 HMDB0000032 CHEBI:17759 Oscillibacter 459786 gm0484 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Retinol 445354 HMDB0000305 CHEBI:17336 Lachnospiraceae 186803 gm0386 family Cholesterol 5997 HMDB0000067 CHEBI:16113 Phenylalanine 6140 HMDB0000159 CHEBI:17295 Lachnospiraceae 186803 gm0386 family Cholesterol 5997 HMDB0000067 CHEBI:16113 Glutamic acid 33032 HMDB0000148 CHEBI:16015 Lachnospiraceae 186803 gm0386 family Cholesterol 5997 HMDB0000067 CHEBI:16113 3-Phenylpropionic acid 107 HMDB0000764 CHEBI:28631 Lachnospiraceae 186803 gm0386 family Cholesterol 5997 HMDB0000067 CHEBI:16113 Cholic acid 221493 HMDB0000619 CHEBI:16359 Lachnospiraceae 186803 gm0386 family Cholesterol 5997 HMDB0000067 CHEBI:16113 Eicosapentaenoic acid 446284 HMDB0001999 CHEBI:28364 Lachnospiraceae 186803 gm0386 family Cholesterol 5997 HMDB0000067 CHEBI:16113 Chenodeoxycholic acid 10133 HMDB0000518 CHEBI:16755 Lachnospiraceae 186803 gm0386 family Cholesterol 5997 HMDB0000067 CHEBI:16113 Desoxycortone 6166 HMDB0000016 CHEBI:16973 Lachnospiraceae 186803 gm0386 family Cholesterol 5997 HMDB0000067 CHEBI:16113 7-Dehydrocholesterol 439423 HMDB0000032 CHEBI:17759 Lachnospiraceae 186803 gm0386 family Cholesterol 5997 HMDB0000067 CHEBI:16113 Retinol 445354 HMDB0000305 CHEBI:17336 Clostridium IV gm0202 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Phenylalanine 6140 HMDB0000159 CHEBI:17295 Clostridium IV gm0202 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Glutamic acid 33032 HMDB0000148 CHEBI:16015 Clostridium IV gm0202 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 3-Phenylpropionic acid 107 HMDB0000764 CHEBI:28631 Clostridium IV gm0202 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Cholic acid 221493 HMDB0000619 CHEBI:16359 Clostridium IV gm0202 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Eicosapentaenoic acid 446284 HMDB0001999 CHEBI:28364 Clostridium IV gm0202 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Chenodeoxycholic acid 10133 HMDB0000518 CHEBI:16755 Clostridium IV gm0202 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Desoxycortone 6166 HMDB0000016 CHEBI:16973 Clostridium IV gm0202 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 7-Dehydrocholesterol 439423 HMDB0000032 CHEBI:17759 Clostridium IV gm0202 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Retinol 445354 HMDB0000305 CHEBI:17336 Clostridium XlVa gm0764 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Phenylalanine 6140 HMDB0000159 CHEBI:17295 Clostridium XlVa gm0764 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Glutamic acid 33032 HMDB0000148 CHEBI:16015 Clostridium XlVa gm0764 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 3-Phenylpropionic acid 107 HMDB0000764 CHEBI:28631 Clostridium XlVa gm0764 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Cholic acid 221493 HMDB0000619 CHEBI:16359 Clostridium XlVa gm0764 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Eicosapentaenoic acid 446284 HMDB0001999 CHEBI:28364 Clostridium XlVa gm0764 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Chenodeoxycholic acid 10133 HMDB0000518 CHEBI:16755 Clostridium XlVa gm0764 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Desoxycortone 6166 HMDB0000016 CHEBI:16973 Clostridium XlVa gm0764 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 7-Dehydrocholesterol 439423 HMDB0000032 CHEBI:17759 Clostridium XlVa gm0764 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Retinol 445354 HMDB0000305 CHEBI:17336 Prevotella 838 gm0535 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Myristic acid 11005 HMDB0000806 CHEBI:28875 Prevotella 838 gm0535 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 l-Isoleucine 6306 HMDB0000172 CHEBI:17191 Prevotella 838 gm0535 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Benzoic acid 243 HMDB0001870 CHEBI:30746 Prevotella 838 gm0535 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Paraprevotella 577309 gm0500 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Myristic acid 11005 HMDB0000806 CHEBI:28875 Paraprevotella 577309 gm0500 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 l-Isoleucine 6306 HMDB0000172 CHEBI:17191 Paraprevotella 577309 gm0500 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Benzoic acid 243 HMDB0001870 CHEBI:30746 Paraprevotella 577309 gm0500 genus Cholesterol 5997 HMDB0000067 CHEBI:16113 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Clostridium 1485 gm0187 genus 3-Phenylpropionic acid 107 HMDB0000764 CHEBI:28631 Oscillibacter 459786 gm0484 genus 3-Phenylpropionic acid 107 HMDB0000764 CHEBI:28631 Lachnospiraceae 186803 gm0386 family 3-Phenylpropionic acid 107 HMDB0000764 CHEBI:28631 Clostridium 1485 gm0187 genus Benzoic acid 243 HMDB0001870 CHEBI:30746 Oscillibacter 459786 gm0484 genus Benzoic acid 243 HMDB0001870 CHEBI:30746 Lachnospiraceae 186803 gm0386 family Benzoic acid 243 HMDB0001870 CHEBI:30746 Asaccharobacter celatus JCM 14811 gm0886 strain Epigallocatechin 72277 HMDB0038361 CHEBI:42255 4'-dehydroxylated (−)-epigallocatechin Asaccharobacter celatus JCM 14811 gm0886 strain Epigallocatechin 72277 HMDB0038361 CHEBI:42255 1-(3,4,5-trihydroxyphenyl)-3-(2,4,6trihydroxyphenyl)propan-2-ol Adlercreutzia equolifaciens JCM 14793 gm0887 strain Epigallocatechin 72277 HMDB0038361 CHEBI:42255 4'-dehydroxylated (−)-epigallocatechin Asaccharobacter celatus JCM 14811 gm0886 strain 4'-dehydroxylated (−)-epigallocatechin 1-(3,5-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)propan-2-ol Adlercreutzia equolifaciens JCM 14793 gm0887 strain 1-(3,4,5-trihydroxyphenyl)-3-(2,4,6trihydroxyphenyl)propan-2-ol Adlercreutzia equolifaciens JCM 14793 gm0887 strain 4'-dehydroxylated isomer (−)-gallocatechin Adlercreutzia equolifaciens JCM 14793 gm0887 strain 1-(3,4,5-trihydroxyphenyl)-3-(2,4,6trihydroxyphenyl)propan-2-ol 1-(3,5-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)propan-2-ol Slackia equolifaciens JCM 16059 gm0888 strain (-)-Gallocatechin 9882981 CHEBI:71225 4'-dehydroxylated isomer (−)-gallocatechin Slackia equolifaciens JCM 16059 gm0888 strain (-)-Gallocatechin 9882981 CHEBI:71225 1-(3,5-dihydroxyphenyl)-3-(2,4,6-trihydroxyphenyl)propan-2-ol Slackia equolifaciens JCM 16059 gm0888 strain (-)-Gallocatechin 9882981 CHEBI:71225 1-(3,4,5-trihydroxyphenyl)-3-(2,4,6trihydroxyphenyl)propan-2-ol Clostridium butyricum CBM588 gm0889 strain Acetate 175 CHEBI:30089 Clostridium scindens 29347 gm0208 species Bile acid 439520 CHEBI:22868 Faecalibacterium prausnitzii ATCC 27766 gm0899 strain Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii ATCC 27766 gm0899 strain Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii ATCC 27766 gm0899 strain Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii ATCC 27766 gm0899 strain Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii ATCC 27766 gm0899 strain Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii S3L/3 gm0901 strain 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Benzoic acid 243 HMDB0001870 CHEBI:30746 Faecalibacterium prausnitzii S3L/3 gm0901 strain 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 4-Hydroxybenzoic acid 135 HMDB0000500 CHEBI:30763 Faecalibacterium prausnitzii S3L/3 gm0901 strain 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Indole-3-carboxylic acid 69867 HMDB0003320 CHEBI:24809 Eubacterium rectale DSM 17629 657318 gm0907 strain 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Benzoic acid 243 HMDB0001870 CHEBI:30746 Eubacterium rectale DSM 17629 657318 gm0907 strain 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 4-Hydroxybenzoic acid 135 HMDB0000500 CHEBI:30763 Eubacterium rectale DSM 17629 657318 gm0907 strain 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Indole-3-carboxylic acid 69867 HMDB0003320 CHEBI:24809 Roseburia intestinalis DSM 14610 gm0909 strain 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Benzoic acid 243 HMDB0001870 CHEBI:30746 Roseburia intestinalis DSM 14610 gm0909 strain 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 4-Hydroxybenzoic acid 135 HMDB0000500 CHEBI:30763 Roseburia intestinalis DSM 14610 gm0909 strain 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Indole-3-carboxylic acid 69867 HMDB0003320 CHEBI:24809 Bififidobacterium thetaiotaomicron DSM 2079 818 gm0900 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Bacteroides thetaiotaomicron 818 gm0087 species D-Glucose 5793 HMDB0000122 CHEBI:4167 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Bacteroides eggerthii DSM 20697 483216 gm0903 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Bacteroides eggerthii DSM 20697 483216 gm0903 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Bacteroides eggerthii DSM 20697 483216 gm0903 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Phenyalanine Eubacterium hallii DSM 17630 105843 gm0906 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Phenylacetic acid 999 HMDB0000209 CHEBI:30745 Eubacterium hallii DSM 17630 105843 gm0906 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Eubacterium hallii DSM 17630 105843 gm0906 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Eubacterium hallii DSM 17630 105843 gm0906 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Phenyalanine Intestinibacter bartlettii 261299 gm0779 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Phenylacetic acid 999 HMDB0000209 CHEBI:30745 Intestinibacter bartlettii 261299 gm0779 species D-Glucose 5793 HMDB0000122 CHEBI:4167 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Intestinibacter bartlettii 261299 gm0779 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Faecalibacterium prausnitzii S3L/3 gm0901 strain Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Benzoic acid 243 HMDB0001870 CHEBI:30746 Faecalibacterium prausnitzii S3L/3 gm0901 strain Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 4-Hydroxybenzoic acid 135 HMDB0000500 CHEBI:30763 Faecalibacterium prausnitzii S3L/3 gm0901 strain Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Indole-3-carboxylic acid 69867 HMDB0003320 CHEBI:24809 Eubacterium rectale DSM 17629 657318 gm0907 strain Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Benzoic acid 243 HMDB0001870 CHEBI:30746 Eubacterium rectale DSM 17629 657318 gm0907 strain Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 4-Hydroxybenzoic acid 135 HMDB0000500 CHEBI:30763 Eubacterium rectale DSM 17629 657318 gm0907 strain Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Indole-3-carboxylic acid 69867 HMDB0003320 CHEBI:24809 Roseburia intestinalis DSM 14610 gm0909 strain Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Benzoic acid 243 HMDB0001870 CHEBI:30746 Roseburia intestinalis DSM 14610 gm0909 strain Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 4-Hydroxybenzoic acid 135 HMDB0000500 CHEBI:30763 Roseburia intestinalis DSM 14610 gm0909 strain Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Indole-3-carboxylic acid 69867 HMDB0003320 CHEBI:24809 Faecalibacterium prausnitzii S3L/3 gm0901 strain Phenylacetic acid 999 HMDB0000209 CHEBI:30745 Benzoic acid 243 HMDB0001870 CHEBI:30746 Faecalibacterium prausnitzii S3L/3 gm0901 strain Phenylacetic acid 999 HMDB0000209 CHEBI:30745 4-Hydroxybenzoic acid 135 HMDB0000500 CHEBI:30763 Faecalibacterium prausnitzii S3L/3 gm0901 strain Phenylacetic acid 999 HMDB0000209 CHEBI:30745 Indole-3-carboxylic acid 69867 HMDB0003320 CHEBI:24809 Eubacterium rectale DSM 17629 657318 gm0907 strain Phenylacetic acid 999 HMDB0000209 CHEBI:30745 Benzoic acid 243 HMDB0001870 CHEBI:30746 Eubacterium rectale DSM 17629 657318 gm0907 strain Phenylacetic acid 999 HMDB0000209 CHEBI:30745 4-Hydroxybenzoic acid 135 HMDB0000500 CHEBI:30763 Eubacterium rectale DSM 17629 657318 gm0907 strain Phenylacetic acid 999 HMDB0000209 CHEBI:30745 Indole-3-carboxylic acid 69867 HMDB0003320 CHEBI:24809 Faecalibacterium prausnitzii 853 gm0327 species Phenylacetic acid 999 HMDB0000209 CHEBI:30745 Benzoic acid 243 HMDB0001870 CHEBI:30746 Faecalibacterium prausnitzii 853 gm0327 species Phenylacetic acid 999 HMDB0000209 CHEBI:30745 4-Hydroxybenzoic acid 135 HMDB0000500 CHEBI:30763 Roseburia intestinalis DSM 14610 gm0909 strain Phenylacetic acid 999 HMDB0000209 CHEBI:30745 Benzoic acid 243 HMDB0001870 CHEBI:30746 Roseburia intestinalis DSM 14610 gm0909 strain Phenylacetic acid 999 HMDB0000209 CHEBI:30745 4-Hydroxybenzoic acid 135 HMDB0000500 CHEBI:30763 Roseburia intestinalis DSM 14610 gm0909 strain Phenylacetic acid 999 HMDB0000209 CHEBI:30745 Indole-3-carboxylic acid 69867 HMDB0003320 CHEBI:24809 Bififidobacterium thetaiotaomicron DSM 2079 818 gm0900 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Bififidobacterium thetaiotaomicron DSM 2079 818 gm0900 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Butyrivibrio fibrisolvens 831 gm0782 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Butyrivibrio fibrisolvens 831 gm0782 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Faecalibacterium prausnitzii S3L/3 gm0901 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Faecalibacterium prausnitzii S3L/3 gm0901 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Bifidobacterium adolescentis L2-32 411481 gm0902 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Bifidobacterium adolescentis L2-32 411481 gm0902 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Bacteroides eggerthii DSM 20697 483216 gm0903 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Bacteroides eggerthii DSM 20697 483216 gm0903 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Ruminococcus torques L2-14 657313 gm0904 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Ruminococcus torques L2-14 657313 gm0904 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Ruminococcus torques L2-14 657313 gm0904 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Faecalitalea cylindroides T2-87 717960 gm0905 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Faecalitalea cylindroides T2-87 717960 gm0905 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Faecalitalea cylindroides T2-87 717960 gm0905 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Eubacterium hallii DSM 17630 105843 gm0906 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Eubacterium hallii DSM 17630 105843 gm0906 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Eubacterium hallii DSM 17630 105843 gm0906 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Eubacterium rectale DSM 17629 657318 gm0907 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Eubacterium rectale DSM 17629 657318 gm0907 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Eubacterium rectale DSM 17629 657318 gm0907 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Bifidobacterium adolescentis L2-32 411481 gm0902 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Anaerostipes caccae L1-92 411490 gm0908 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Anaerostipes caccae L1-92 411490 gm0908 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Anaerostipes caccae L1-92 411490 gm0908 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Roseburia intestinalis DSM 14610 gm0909 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Roseburia intestinalis DSM 14610 gm0909 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Roseburia intestinalis DSM 14610 gm0909 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Roseburia intestinalis 166486 gm0574 species Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 391904 gm0910 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 391904 gm0910 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 391904 gm0910 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Intestinibacter bartlettii 261299 gm0779 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-pyruvic acid 803 HMDB0060484 CHEBI:29750 Intestinibacter bartlettii 261299 gm0779 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-lactic acid 92904 CHEBI:24813 Intestinibacter bartlettii 261299 gm0779 species Tryptophan 6305 HMDB0000929 CHEBI:16828 1-Methylindole 11781 Intestinibacter bartlettii 261299 gm0779 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Intestinibacter bartlettii 261299 gm0779 species Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Roseburia inulinivorans DSM 16841 622312 gm0911 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Roseburia inulinivorans DSM 16841 622312 gm0911 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Roseburia inulinivorans DSM 16841 622312 gm0911 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Anaerostipes hadrus Ss2/1 gm0912 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-acetic acid 802 HMDB0000197 CHEBI:16411 Anaerostipes hadrus Ss2/1 gm0912 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Phenyalanine Anaerostipes hadrus Ss2/1 gm0912 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 4-Hydroxyphenylacetic acid 127 HMDB0000020 CHEBI:18101 Faecalibacterium prausnitzii S3L/3 gm0901 strain phenyalanine Phenylpyruvic acid 997 HMDB0000205 CHEBI:30851 Faecalibacterium prausnitzii S3L/3 gm0901 strain phenyalanine Atrolactic acid 1303 HMDB0142137 CHEBI:50392 Eubacterium rectale DSM 17629 657318 gm0907 strain phenyalanine Phenylpyruvic acid 997 HMDB0000205 CHEBI:30851 Eubacterium rectale DSM 17629 657318 gm0907 strain phenyalanine Atrolactic acid 1303 HMDB0142137 CHEBI:50392 Roseburia intestinalis DSM 14610 gm0909 strain phenyalanine Phenylpyruvic acid 997 HMDB0000205 CHEBI:30851 Roseburia intestinalis DSM 14610 gm0909 strain phenyalanine Atrolactic acid 1303 HMDB0142137 CHEBI:50392 Bififidobacterium thetaiotaomicron ATCC 29148 gm0913 strain Acetate 175 CHEBI:30089 Bififidobacterium thetaiotaomicron ATCC 29148 gm0913 strain Propionate 104745 CHEBI:17272 Faecalibacterium prausnitzii DSM 17677 gm0914 strain Acetate 175 CHEBI:30089 Butyrate 104775 CHEBI:17968 Ruminococcus 1263 gm0587 genus Creatine 586 HMDB0000064 CHEBI:16919 Ruminococcus 1263 gm0587 genus 5-Hydroxyindole-3-acetic acid 1826 HMDB0000763 CHEBI:27823 Ruminococcus 1263 gm0587 genus Tyramine 5610 HMDB0000306 CHEBI:15760 Ruminococcus 1263 gm0587 genus Valine 6287 HMDB0000883 CHEBI:16414 Ruminococcus 1263 gm0587 genus l-Isoleucine 6306 HMDB0000172 CHEBI:17191 Ruminococcus 1263 gm0587 genus Chenodeoxycholic acid 10133 HMDB0000518 CHEBI:16755 Ruminococcus 1263 gm0587 genus Ursodeoxycholic acid 31401 HMDB0000946 CHEBI:9907 Ruminococcus 1263 gm0587 genus 2-Hydroxy-2-methylbutanenitrile 97823 CHEBI:60954 Ruminococcus 1263 gm0587 genus N-Acetylputrescine 122356 HMDB0002064 CHEBI:17768 Ruminococcus 1263 gm0587 genus Proline 145742 HMDB0000162 CHEBI:17203 Ruminococcus 1263 gm0587 genus Betonicine 164642 HMDB0029412 CHEBI:85533 Ruminococcus 1263 gm0587 genus Cholic acid 221493 HMDB0000619 CHEBI:16359 Ruminococcus 1263 gm0587 genus Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Ruminococcus 1263 gm0587 genus N-Acetyl-D-Mannosamine 439281 CHEBI:63153 Ruminococcus 1263 gm0587 genus 2-Formaminobenzoylacetate 440807 CHEBI:1098 Ruminococcus 1263 gm0587 genus 12-Ketolithocholic acid 3080612 HMDB0000328 CHEBI:139134 Ruminococcus 1263 gm0587 genus Hyocholate 92805 CHEBI:133661 Clostridium 1485 gm0187 genus Hypoxanthine 135398638 HMDB0000157 CHEBI:17368 Lachnospiraceae 186803 gm0386 family Creatine 586 HMDB0000064 CHEBI:16919 Lachnospiraceae 186803 gm0386 family Chenodeoxycholic acid 10133 HMDB0000518 CHEBI:16755 Lachnospiraceae 186803 gm0386 family 4-Acetamidobutyric acid 18189 HMDB0003681 CHEBI:17645 Lachnospiraceae 186803 gm0386 family N(6)-Methyllysine 164795 HMDB0002038 CHEBI:17604 Lachnospiraceae 186803 gm0386 family N-Acetyl-D-Mannosamine 439281 CHEBI:63153 Lachnospiraceae 186803 gm0386 family N-Isovaleroylglycine 546304 HMDB0000678 CHEBI:70984 Lachnospiraceae 186803 gm0386 family 12-Ketolithocholic acid 3080612 HMDB0000328 CHEBI:139134 Lachnospiraceae 186803 gm0386 family 21H-Biline-8,12-dipropanoic acid, 3,18-diethyl-1,4,5,15,16,19,22,24-octahydro-2,7,13,17-tetramethyl-1,19-dioxo- 6433298 Lachnospiraceae 186803 gm0386 family Murideoxycholate 21158657 CHEBI:58876 Lachnospiraceae 186803 gm0386 family Pentahomomethionine 25010767 CHEBI:50713 Lachnospiraceae 186803 gm0386 family 7-Hydroxy-3-oxocholanoic acid 53477692 HMDB0000460 Lachnospiraceae 186803 gm0386 family Nutriadeoxycholate vulpecholate Lachnospiraceae 186803 gm0386 family 7a-hydroxy-3-oxo-5b-cholanoate Parabacteroides 375288 gm0495 genus 2-Hydroxy-2-methylbutanenitrile 97823 CHEBI:60954 Parabacteroides 375288 gm0495 genus Proline 145742 HMDB0000162 CHEBI:17203 Parabacteroides 375288 gm0495 genus Valyl-Hydroxyproline 10242944 HMDB0029128 Ruminococcaceae 541000 gm0581 genus Creatine 586 HMDB0000064 CHEBI:16919 Ruminococcaceae 541000 gm0581 genus Chenodeoxycholic acid 10133 HMDB0000518 CHEBI:16755 Ruminococcaceae 541000 gm0581 genus 4-Acetamidobutyric acid 18189 HMDB0003681 CHEBI:17645 Ruminococcaceae 541000 gm0581 genus Betonicine 164642 HMDB0029412 CHEBI:85533 Ruminococcaceae 541000 gm0581 genus N(6)-Methyllysine 164795 HMDB0002038 CHEBI:17604 Ruminococcaceae 541000 gm0581 genus N-Acetyl-D-Mannosamine 439281 CHEBI:63153 Ruminococcaceae 541000 gm0581 genus N-Isovaleroylglycine 546304 HMDB0000678 CHEBI:70984 Ruminococcaceae 541000 gm0581 genus 12-Ketolithocholic acid 3080612 HMDB0000328 CHEBI:139134 Ruminococcaceae 541000 gm0581 genus 21H-Biline-8,12-dipropanoic acid, 3,18-diethyl-1,4,5,15,16,19,22,24-octahydro-2,7,13,17-tetramethyl-1,19-dioxo- 6433298 Ruminococcaceae 541000 gm0581 genus Murideoxycholate 21158657 CHEBI:58876 Ruminococcaceae 541000 gm0581 genus Pentahomomethionine 25010767 CHEBI:50713 Ruminococcaceae 541000 gm0581 genus Nutriadeoxycholate vulpecholate Ruminococcaceae 541000 gm0581 genus 7a-hydroxy-3-oxo-5b-cholanoate Blautia 572511 gm0117 genus l-Isoleucine 6306 HMDB0000172 CHEBI:17191 Blautia 572511 gm0117 genus 1-Methoxypyrene 160236 HMDB0060324 CHEBI:81610 Blautia 572511 gm0117 genus Valyl-Hydroxyproline 10242944 HMDB0029128 Intestinibacter 1505657 gm0767 genus 2-Hydroxy-2-methylbutanenitrile 97823 CHEBI:60954 Intestinibacter 1505657 gm0767 genus Proline 145742 HMDB0000162 CHEBI:17203 Intestinibacter 1505657 gm0767 genus 1-Methoxypyrene 160236 HMDB0060324 CHEBI:81610 Intestinibacter 1505657 gm0767 genus Valyl-Hydroxyproline 10242944 HMDB0029128 Hungatella 1649459 gm0787 genus 2-Hydroxy-2-methylbutanenitrile 97823 CHEBI:60954 Hungatella 1649459 gm0787 genus Proline 145742 HMDB0000162 CHEBI:17203 Hungatella 1649459 gm0787 genus Valyl-Hydroxyproline 10242944 Ruminococcus torques 33039 gm0594 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetate 175 CHEBI:30089 Roseburia gnavus gm0798 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetate 175 CHEBI:30089 Roseburia obeum A2-162 gm0923 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Acetate 175 CHEBI:30089 Roseburia gnavus gm0798 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Formate 283 CHEBI:15740 Ruminococcus torques 33039 gm0594 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Lactate 91435 CHEBI:24996 Roseburia gnavus gm0798 species D-Glucose 5793 HMDB0000122 CHEBI:4167 Lactate 91435 CHEBI:24996 Roseburia inulinivorans DSM 16841 622312 gm0911 strain D-Glucose 5793 HMDB0000122 CHEBI:4167 Butyrate 104775 CHEBI:17968 Ruminococcus sp. 41978 gm0593 species L-Fucose 17106 HMDB0000174 CHEBI:2181 Propionate 104745 CHEBI:17272 Akkermansia muciniphila DSM 22959 gm0924 strain L-Fucose 17106 HMDB0000174 CHEBI:2181 Propionate 104745 CHEBI:17272 Roseburia inulinivorans DSM 16841 622312 gm0911 strain L-Fucose 17106 HMDB0000174 CHEBI:2181 Propionate 104745 CHEBI:17272 Clostridium botulinum 1491 gm0191 species Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Clostridium sp. MSTE9gi gm0919 species Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Anaerotignum propionicum DSM 1682 991789 gm0920 strain Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Peptoniphilus indolicus 33030 gm0795 species Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Coprococcus eutactus ATCC 27759 411474 gm0917 strain Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Fusobacterium sp. 68766 gm0347 species Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Coprococcus catus VPI-C6-61 gm0921 strain Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Desulfosporosinus sp. 157907 gm0793 species Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Anaerotignum lactatifermentans DSM 14214 1121323 gm0922 strain Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Coprococcus comes ATCC 27758 470146 gm0918 strain Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Megasphaera sp. 2023260 gm0792 species Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Coprococcus eutactus ATCC 27759 411474 gm0917 strain Formate 283 CHEBI:15740 Propionate 104745 CHEBI:17272 Coprococcus comes ATCC 27758 470146 gm0918 strain Formate 283 CHEBI:15740 Propionate 104745 CHEBI:17272 Megasphaera elsdenii DSM 20460 1064535 gm0925 strain Acrylate 25188 CHEBI:37080 Propionate 104745 CHEBI:17272 Anaerotignum propionicum DSM 1682 991789 gm0920 strain Acrylate 25188 CHEBI:37080 Propionate 104745 CHEBI:17272 Coprococcus catus VPI-C6-61 gm0921 strain Acrylate 25188 CHEBI:37080 Propionate 104745 CHEBI:17272 Coprococcus catus VPI-C6-61 gm0921 strain Butyrate 104775 CHEBI:17968 Propionate 104745 CHEBI:17272 Roseburia inulinivorans DSM 16841 622312 gm0911 strain Butyrate 104775 CHEBI:17968 Propionate 104745 CHEBI:17272 Salmonella enterica TAM 6421 gm0926 strain Propanediol 134919 Propionate 104745 CHEBI:17272 Roseburia inulinivorans DSM 16841 622312 gm0911 strain Propanediol 134919 Propionate 104745 CHEBI:17272 Veillonella parvula L59 29466 gm0927 strain Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Phascolarctobacterium faecium 33025 gm0791 species Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Veillonella dispar 39778 gm0677 species Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Clostridium hathewayi DSM 13479 ZP_6112601 gm0928 strain Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Dialister succinatiphilus YIT 11850 742743 gm0929 strain Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Phascolarctobacterium succinatutens YIT 12067 626939 gm0930 strain Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Selenomonas ruminantium TAM 6421 gm0931 strain Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Butyrivibrio fibrisolvens 831 gm0782 species Butyrate 104775 CHEBI:17968 Butyrivibrio fibrisolvens 831 gm0782 species Butyrate 104775 CHEBI:17968 Clostridium 1485 gm0187 genus Butyrate 104775 CHEBI:17968 Clostridium 1485 gm0187 genus Butyrate 104775 CHEBI:17968 Eubacterium 1730 gm0309 genus Butyrate 104775 CHEBI:17968 Eubacterium 1730 gm0309 genus Butyrate 104775 CHEBI:17968 Bacteroides thetaiotaomicron ATCC 29148D-5 gm0944 strain Phenylacetic acid 999 HMDB0000209 CHEBI:30745 Bacteroides ovatus 28116 gm0084 species Phenylacetic acid 999 HMDB0000209 CHEBI:30745 Enterobacteriaceae 543 gm0282 family Tyrosine 6057 HMDB0000158 CHEBI:17895 Phenyl sulfate 18795569 CHEBI:85289 Enterobacteriaceae 543 gm0282 family Tyrosine 6057 HMDB0000158 CHEBI:17895 Phenyl sulfate 18795569 CHEBI:85289 Enterobacteriaceae 543 gm0282 family Tyrosine 6057 HMDB0000158 CHEBI:17895 Phenyl sulfate 18795569 CHEBI:85289 Enterobacteriaceae 543 gm0282 family Tyrosine 6057 HMDB0000158 CHEBI:17895 Phenyl sulfate 18795569 CHEBI:85289 Enterobacteriaceae 543 gm0282 family Tyrosine 6057 HMDB0000158 CHEBI:17895 Phenyl sulfate 18795569 CHEBI:85289 Enterobacteriaceae 543 gm0282 family Tyrosine 6057 HMDB0000158 CHEBI:17895 Phenyl sulfate 18795569 CHEBI:85289 Slackia sp. TM-30 gm0950 species Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Bifidobacterium dentium ATCC 27678 473819 gm0952 strain gamma-Aminobutyric acid 119 HMDB0000112 CHEBI:16865 Bifidobacterium dentium ATCC 27678 473819 gm0952 strain gamma-Aminobutyric acid 119 HMDB0000112 CHEBI:16865 Bifidobacterium dentium ATCC 27678 473819 gm0952 strain gamma-Aminobutyric acid 119 HMDB0000112 CHEBI:16865 Bifidobacterium dentium ATCC 27678 473819 gm0952 strain gamma-Aminobutyric acid 119 HMDB0000112 CHEBI:16865 Bifidobacterium dentium ATCC 27678 473819 gm0952 strain gamma-Aminobutyric acid 119 HMDB0000112 CHEBI:16865 Bifidobacterium dentium ATCC 27678 473819 gm0952 strain gamma-Aminobutyric acid 119 HMDB0000112 CHEBI:16865 Bifidobacterium dentium ATCC 27678 473819 gm0952 strain Acetate 175 CHEBI:30089 Clostridium orbiscindens 292800 gm0823 species 3-(4-Hydroxyphenyl)propionic acid 10394 HMDB0002199 CHEBI:32980 Lactobacillus reuteri D8 gm0967 strain Indole-3-carboxaldehyde 10256 HMDB0029737 CHEBI:28238 Saccharomyces cerevisiae 4932 gm0816 species Purine 1044 HMDB0001366 CHEBI:17258 Saccharomyces cerevisiae 4932 gm0816 species Uric acid 1175 HMDB0000289 CHEBI:17775 Bifidobacterium sp. LKM512 gm0972 species Sennoside 656822 CHEBI:34974 Rheinanthrone 119396 HMDB0039449 CHEBI:174546 Bifidobacterium sp. LKM10070 gm0973 species Sennoside 656822 CHEBI:34974 Rheinanthrone 119396 HMDB0039449 CHEBI:174546 Enterococcus durans TN-3 gm0974 strain Butyrate 104775 CHEBI:17968 Escherichia 561 gm0304 genus Indole 798 HMDB0000738 CHEBI:16881 Bacteroides 816 gm0077 genus Indole 798 HMDB0000738 CHEBI:16881 Clostridium 1485 gm0187 genus Indole 798 HMDB0000738 CHEBI:16881 Propionibacterium freudenreichii TL133 gm0975 strain Acetate 175 CHEBI:30089 Propionibacterium freudenreichii TL133 gm0975 strain Propionate 104745 CHEBI:17272 Propionibacterium freudenreichii TL133 gm0975 strain Butyrate 104775 CHEBI:17968 Bacteroides thetaiotaomicron BT_0558 gm0976 strain L-Fucose 17106 HMDB0000174 CHEBI:2181 GDP-L-fucose 135412609 HMDB0001095 CHEBI:17009 Bacteroides thetaiotaomicron BT_1224 gm0977 strain L-Fucose 17106 HMDB0000174 CHEBI:2181 GDP-L-fucose 135412609 HMDB0001095 CHEBI:17009 Bacteroides thetaiotaomicron BT_1225 gm0978 strain L-Fucose 17106 HMDB0000174 CHEBI:2181 GDP-L-fucose 135412609 HMDB0001095 CHEBI:17009 Enterobacteriaceae 543 gm0282 family Oxiglutatione 65359 HMDB0003337 CHEBI:17858 Enterobacteriaceae 543 gm0282 family Cysteine-glutathione disulfide 3080690 HMDB0000656 Christensenellaceae 99719 gm0174 family Butyrate 104775 CHEBI:17968 Lactobacillus 1578 gm0393 genus Butyrate 104775 CHEBI:17968 Blautia 572511 gm0117 genus Butyrate 104775 CHEBI:17968 Nippostrongylus brasiliensis 27835 gm0862 species Succinate 160419 CHEBI:30031 Tritrichomonas 5723 gm0863 genus Succinate 160419 CHEBI:30031 Faecalibacterium prausnitzii 853 gm0327 species Methanol, (methyl-ONN-azoxy)- 11554 Klebsiella 570 gm0380 genus Melamine 7955 HMDB0041922 CHEBI:27915 Cyanuric acid 7956 HMDB0041861 CHEBI:38028 Bacteroides sp. 2778071 gm0086 species Propionate 104745 CHEBI:17272 Anaerococcus hydrogenalis DSM 7454 561177 gm1009 strain Trimethylamine 1146 HMDB0000906 CHEBI:18139 Clostridium asparagiforme DSM 15981 518636 gm1010 strain Trimethylamine 1146 HMDB0000906 CHEBI:18139 Clostridium hathewayi DSM 13749 gm1011 strain Trimethylamine 1146 HMDB0000906 CHEBI:18139 Clostridium sporogenes ATCC 15579 471871 gm1012 strain Trimethylamine 1146 HMDB0000906 CHEBI:18139 Escherichia fergusonii ATCC 35469 585054 gm1013 strain Trimethylamine 1146 HMDB0000906 CHEBI:18139 Proteus penneri ATCC 35198 471881 gm1014 strain Trimethylamine 1146 HMDB0000906 CHEBI:18139 Providencia rettgeri DSM 1131 521000 gm1015 strain Trimethylamine 1146 HMDB0000906 CHEBI:18139 Edwardsiella tarda ATCC 23685 500638 gm1016 strain Trimethylamine 1146 HMDB0000906 CHEBI:18139 Providencia rustiganii 158850 gm0866 species Trimethylamine 1146 HMDB0000906 CHEBI:18139 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Saccharomyces cerevisiae 4932 gm0816 species 1-Phenyl-1,2-propanedione 11363 HMDB0035243 CHEBI:63552 Prevotella copri 165179 gm0536 species Succinate 160419 CHEBI:30031 Enterococcus durans 53345 gm0742 species Butyrate 104775 CHEBI:17968 Enterococcus durans 53345 gm0742 species Butyrate 104775 CHEBI:17968 Bacteroides thetaiotaomicron 818 gm0087 species 2-Oxoglutaric acid 51 HMDB0000208 CHEBI:30915 lactobacilli 1578 gm0870 genus Indole-3-carboxaldehyde 10256 HMDB0029737 CHEBI:28238 Muribaculaceae 2005473 gm0462 family Ferulic acid 445858 HMDB0000954 CHEBI:17620 3-(4-Hydroxy-3-methoxyphenyl)propionic acid 14340 HMDB0062121 CHEBI:86612 Porphyromonadaceae 171551 gm0532 family Ferulic acid 445858 HMDB0000954 CHEBI:17620 3-(4-Hydroxy-3-methoxyphenyl)propionic acid 14340 HMDB0062121 CHEBI:86612 Coriobacteriaceae 84107 gm0226 family Ferulic acid 445858 HMDB0000954 CHEBI:17620 3-(4-Hydroxy-3-methoxyphenyl)propionic acid 14340 HMDB0062121 CHEBI:86612 Bacteroidetes 200643 gm0090 phylum Ferulic acid 445858 HMDB0000954 CHEBI:17620 3-(4-Hydroxy-3-methoxyphenyl)propionic acid 14340 HMDB0062121 CHEBI:86612 Actinobacteria 201174 gm0016 phylum Ferulic acid 445858 HMDB0000954 CHEBI:17620 3-(4-Hydroxy-3-methoxyphenyl)propionic acid 14340 HMDB0062121 CHEBI:86612 Firmicutes 1239 gm0332 phylum Ferulic acid 445858 HMDB0000954 CHEBI:17620 3-(4-Hydroxy-3-methoxyphenyl)propionic acid 14340 HMDB0062121 CHEBI:86612 Deferribacteres 200930 gm0240 phylum Ferulic acid 445858 HMDB0000954 CHEBI:17620 3-(4-Hydroxy-3-methoxyphenyl)propionic acid 14340 HMDB0062121 CHEBI:86612 Clostridium 1485 gm0187 genus Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Clostridium 1485 gm0187 genus Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Clostridium 1485 gm0187 genus Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Clostridium 1485 gm0187 genus Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Clostridium 1485 gm0187 genus Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Clostridium 1485 gm0187 genus Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Bifidobacterium longum subsp. infantis 1682 gm0853 subspecies Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-lactic acid 92904 CHEBI:24813 Limosilactobacillus reuteri 1598 gm1034 species Ergothioneine 5351619 HMDB0003045 CHEBI:4828 " Clostridium butyricum" 1492 gm1035 species Butyrate 104775 CHEBI:17968 " Clostridium butyricum" 1492 gm1035 species Butyrate 104775 CHEBI:17968 " Clostridium butyricum" 1492 gm1035 species Butyrate 104775 CHEBI:17968 " Clostridium butyricum" 1492 gm1035 species Butyrate 104775 CHEBI:17968 " Clostridium butyricum" 1492 gm1035 species Butyrate 104775 CHEBI:17968 " Clostridium butyricum" 1492 gm1035 species Butyrate 104775 CHEBI:17968 " Clostridium butyricum" 1492 gm1035 species Butyrate 104775 CHEBI:17968 " Clostridium butyricum" 1492 gm1035 species Butyrate 104775 CHEBI:17968 " Clostridium butyricum" 1492 gm1035 species Butyrate 104775 CHEBI:17968 " Butyricicoccus pullicaecorum" 501571 gm1039 species Butyrate 104775 CHEBI:17968 Bacteroides 816 gm0077 genus Cholic acid 221493 HMDB0000619 CHEBI:16359 Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Bacteroides 816 gm0077 genus Cholic acid 221493 HMDB0000619 CHEBI:16359 Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Bacteroides 816 gm0077 genus Cholic acid 221493 HMDB0000619 CHEBI:16359 Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Bacteroides 816 gm0077 genus Cholic acid 221493 HMDB0000619 CHEBI:16359 Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Bacteroides 816 gm0077 genus Cholic acid 221493 HMDB0000619 CHEBI:16359 Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Bacteroides 816 gm0077 genus Cholic acid 221493 HMDB0000619 CHEBI:16359 Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Bacteroides 816 gm0077 genus Cholic acid 221493 HMDB0000619 CHEBI:16359 Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Bacteroides intestinalis AM-0 gm1040 strain Cholic acid 221493 HMDB0000619 CHEBI:16359 7-Ketodeoxycholic acid 188292 HMDB0000391 CHEBI:16390 Bacteroides intestinalis AM-0 gm1040 strain Cholic acid 221493 HMDB0000619 CHEBI:16359 7-Ketodeoxycholic acid 188292 HMDB0000391 CHEBI:16390 Bacteroides intestinalis AM-0 gm1040 strain Cholic acid 221493 HMDB0000619 CHEBI:16359 7-Ketodeoxycholic acid 188292 HMDB0000391 CHEBI:16390 Bacteroides intestinalis AM-0 gm1040 strain Cholic acid 221493 HMDB0000619 CHEBI:16359 7-Ketodeoxycholic acid 188292 HMDB0000391 CHEBI:16390 Bacteroides intestinalis AM-0 gm1040 strain Cholic acid 221493 HMDB0000619 CHEBI:16359 7-Ketodeoxycholic acid 188292 HMDB0000391 CHEBI:16390 Bacteroides intestinalis AM-0 gm1040 strain Cholic acid 221493 HMDB0000619 CHEBI:16359 7-Ketodeoxycholic acid 188292 HMDB0000391 CHEBI:16390 Bacteroides intestinalis AM-0 gm1040 strain Cholic acid 221493 HMDB0000619 CHEBI:16359 7-Ketodeoxycholic acid 188292 HMDB0000391 CHEBI:16390 Bacteroidaceae 815 gm0072 family Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Bacteroidaceae 815 gm0072 family Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Bacteroidaceae 815 gm0072 family Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Bacteroidaceae 815 gm0072 family Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Bacteroidaceae 815 gm0072 family Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Bacteroidaceae 815 gm0072 family Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Bacteroidaceae 815 gm0072 family Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Clostridium sporogenes ATCC 15579 471871 gm1012 strain Indole 798 HMDB0000738 CHEBI:16881 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Enterococcus avium LY1 gm1041 strain Rutin 5280805 HMDB0003249 CHEBI:28527 Quercetin 5280343 HMDB0005794 CHEBI:16243 Enterococcus avium LY1 gm1041 strain Rutin 5280805 HMDB0003249 CHEBI:28527 3,4-Dihydroxyphenylacetic acid 547 HMDB0001336 CHEBI:41941 Enterococcus avium LY1 gm1041 strain Quercitrin 5280459 HMDB0033751 CHEBI:17558 Quercetin 5280343 HMDB0005794 CHEBI:16243 Enterococcus avium LY1 gm1041 strain Quercitrin 5280459 HMDB0033751 CHEBI:17558 Kaempferol 5280863 HMDB0005801 CHEBI:28499 Enterococcus avium LY1 gm1041 strain Quercitrin 5280459 HMDB0033751 CHEBI:17558 Isorhamnetin 5281654 HMDB0002655 CHEBI:6052 Enterococcus avium LY1 gm1041 strain Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Quercetin 5280343 HMDB0005794 CHEBI:16243 Enterococcus avium LY1 gm1041 strain Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Kaempferol 5280863 HMDB0005801 CHEBI:28499 Enterococcus avium LY1 gm1041 strain Isoquercitrin 5280804 HMDB0037362 CHEBI:68352 Isorhamnetin 5281654 HMDB0002655 CHEBI:6052 Odoribacter splanchnicus 28118 gm0873 species Quinic acid 6508 HMDB0003072 CHEBI:17521 Phocaeicola vulgatus 821 gm0874 species Lysophosphatidylethanolamine 73755142 Bacteroides ovatus 28116 gm0084 species Lysophosphatidylethanolamine 73755142 Bacteroides ovatus 28116 gm0084 species 4'-Hydroxy-3',5,6,7,8-pentamethoxyflavone 21593928 HMDB0029547 CHEBI:175929 Odoribacter splanchnicus 28118 gm0873 species 4'-Hydroxy-3',5,6,7,8-pentamethoxyflavone 21593928 HMDB0029547 CHEBI:175929 Bacteroides caccae 47678 gm0079 species Acetate 175 CHEBI:30089 Bacteroides caccae 47678 gm0079 species Propionate 104745 CHEBI:17272 Bacteroides caccae 47678 gm0079 species Succinate 160419 CHEBI:30031 Bacteroides thetaiotaomicron 818 gm0087 species Acetate 175 CHEBI:30089 Bacteroides thetaiotaomicron 818 gm0087 species Propionate 104745 CHEBI:17272 Bacteroides thetaiotaomicron 818 gm0087 species Succinate 160419 CHEBI:30031 Phocaeicola massiliensis 204516 gm0875 species Acetate 175 CHEBI:30089 Phocaeicola massiliensis 204516 gm0875 species Propionate 104745 CHEBI:17272 Phocaeicola massiliensis 204516 gm0875 species Succinate 160419 CHEBI:30031 Parabacteroides distasonis 823 gm0496 species Acetate 175 CHEBI:30089 Parabacteroides distasonis 823 gm0496 species Propionate 104745 CHEBI:17272 Parabacteroides distasonis 823 gm0496 species Succinate 160419 CHEBI:30031 Parabacteroides distasonis 823 gm0496 species Butyrate 104775 CHEBI:17968 Firmicutes 1239 gm0332 phylum Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Firmicutes 1239 gm0332 phylum Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Firmicutes 1239 gm0332 phylum Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Firmicutes 1239 gm0332 phylum Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Firmicutes 1239 gm0332 phylum Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Firmicutes 1239 gm0332 phylum Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Firmicutes 1239 gm0332 phylum Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Firmicutes 1239 gm0332 phylum Lactic acid 612 HMDB0144295 CHEBI:78320 Propionate 104745 CHEBI:17272 Blautia hydrogenotrophica 53443 gm0876 species Pyruvate 107735 CHEBI:15361 Acetate 175 CHEBI:30089 Blautia hydrogenotrophica 53443 gm0876 species Pyruvate 107735 CHEBI:15361 Acetate 175 CHEBI:30089 Blautia hydrogenotrophica 53443 gm0876 species Pyruvate 107735 CHEBI:15361 Acetate 175 CHEBI:30089 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Eubacterium rectale 39491 gm0316 species Butyrate 104775 CHEBI:17968 Eubacterium rectale 39491 gm0316 species Butyrate 104775 CHEBI:17968 Eubacterium rectale 39491 gm0316 species Butyrate 104775 CHEBI:17968 Eubacterium rectale 39491 gm0316 species Butyrate 104775 CHEBI:17968 Eubacterium rectale 39491 gm0316 species Butyrate 104775 CHEBI:17968 Eubacterium rectale 39491 gm0316 species Butyrate 104775 CHEBI:17968 Eubacterium rectale 39491 gm0316 species Butyrate 104775 CHEBI:17968 Eubacterium rectale 39491 gm0316 species Butyrate 104775 CHEBI:17968 Anaerobutyricum hallii 39488 gm0776 species Butyrate 104775 CHEBI:17968 Anaerobutyricum hallii 39488 gm0776 species Butyrate 104775 CHEBI:17968 Anaerobutyricum hallii 39488 gm0776 species Butyrate 104775 CHEBI:17968 Anaerobutyricum hallii 39488 gm0776 species Butyrate 104775 CHEBI:17968 Anaerobutyricum hallii 39488 gm0776 species Butyrate 104775 CHEBI:17968 Anaerobutyricum hallii 39488 gm0776 species Butyrate 104775 CHEBI:17968 Anaerobutyricum hallii 39488 gm0776 species Butyrate 104775 CHEBI:17968 Anaerobutyricum hallii 39488 gm0776 species Butyrate 104775 CHEBI:17968 Ruminococcus bromii 40518 gm0588 species Starch 145864875 CHEBI:28017 Butyrate 104775 CHEBI:17968 Ruminococcus bromii 40518 gm0588 species Starch 145864875 CHEBI:28017 Butyrate 104775 CHEBI:17968 Ruminococcus bromii 40518 gm0588 species Starch 145864875 CHEBI:28017 Butyrate 104775 CHEBI:17968 Ruminococcus bromii 40518 gm0588 species Starch 145864875 CHEBI:28017 Butyrate 104775 CHEBI:17968 Ruminococcus bromii 40518 gm0588 species Starch 145864875 CHEBI:28017 Butyrate 104775 CHEBI:17968 Ruminococcus bromii 40518 gm0588 species Starch 145864875 CHEBI:28017 Butyrate 104775 CHEBI:17968 Ruminococcus bromii 40518 gm0588 species Starch 145864875 CHEBI:28017 Butyrate 104775 CHEBI:17968 Ruminococcus bromii 40518 gm0588 species Starch 145864875 CHEBI:28017 Butyrate 104775 CHEBI:17968 Bacteroidetes 976 gm0090 phylum Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Bacteroidetes 976 gm0090 phylum Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Bacteroidetes 976 gm0090 phylum Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Bacteroidetes 976 gm0090 phylum Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Bacteroidetes 976 gm0090 phylum Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Bacteroidetes 976 gm0090 phylum Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Bacteroidetes 976 gm0090 phylum Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Bacteroidetes 976 gm0090 phylum Succinate 160419 CHEBI:30031 Propionate 104745 CHEBI:17272 Escherichia coli BW25113 679895 gm0895 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli BW25113 679895 gm0895 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Escherichia coli BW25113 679895 gm0895 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-carboxaldehyde 10256 HMDB0029737 CHEBI:28238 Escherichia coli JW5619 gm1042 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Escherichia coli JW5619 gm1042 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Escherichia coli JW5619 gm1042 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole-3-carboxaldehyde 10256 HMDB0029737 CHEBI:28238 Adlercreutzia equolifaciens MT4s-5 gm1054 strain (-)-Epigallocatechin gallate 65064 HMDB0003153 CHEBI:4806 4-Hydroxy-5-(3-hydroxyphenyl)valeric acid 52920334 CHEBI:137492 Adlercreutzia equolifaciens MT4s-5 gm1054 strain (-)-Epigallocatechin gallate 65064 HMDB0003153 CHEBI:4806 Epigallocatechin 72277 CHEBI:42255 Adlercreutzia equolifaciens MT4s-5 gm1054 strain (-)-Epigallocatechin gallate 65064 HMDB0003153 CHEBI:4806 Gallic acid 370 HMDB0005807 CHEBI:30778 Flavonifractor plautii MT42 gm1055 strain (-)-Epigallocatechin gallate 65064 HMDB0003153 CHEBI:4806 4-Hydroxy-5-(3-hydroxyphenyl)valeric acid 52920334 CHEBI:137492 Flavonifractor plautii MT42 gm1055 strain (-)-Epigallocatechin gallate 65064 HMDB0003153 CHEBI:4806 Epigallocatechin 72277 CHEBI:42255 Flavonifractor plautii MT42 gm1055 strain (-)-Epigallocatechin gallate 65064 HMDB0003153 CHEBI:4806 Gallic acid 370 HMDB0005807 CHEBI:30778 Ruminococcus gnavus 33038 gm0592 species Ursodeoxycholic acid 31401 HMDB0000946 CHEBI:9907 Ruminococcus gnavus 33038 gm0592 species Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Ruminococcus gnavus 33038 gm0592 species Chenodeoxycholic acid 10133 HMDB0000518 CHEBI:16755 Penicillium mallochii CCH01 gm1062 strain Vorinostat 5311 HMDB0015568 CHEBI:45716 Sclerotioramine 135860757 Penicillium mallochii CCH01 gm1062 strain Vorinostat 5311 HMDB0015568 CHEBI:45716 Sclerotiorin 6436015 Eubacterium limosum 1736 gm0315 species Isoxanthohumol 513197 CHEBI:171798 8-Prenylnaringenin 480764 CHEBI:50207 Bacteroides thetaiotaomicron 818 gm0087 species Pectin 441476 HMDB0003402 CHEBI:17309 1,4-Diaminobutane 1045 HMDB0001414 CHEBI:17148 Bacteroides thetaiotaomicron 818 gm0087 species Pectin 441476 HMDB0003402 CHEBI:17309 Spermidine 1102 HMDB0001257 CHEBI:16610 Fusobacterium varium 856 gm0820 species Pectin 441476 HMDB0003402 CHEBI:17309 1,4-Diaminobutane 1045 HMDB0001414 CHEBI:17148 Fusobacterium varium 856 gm0820 species Pectin 441476 HMDB0003402 CHEBI:17309 Spermidine 1102 HMDB0001257 CHEBI:16610 Lactobacillus plantarum 1590 gm0405 species Linoelaidic acid 5282457 HMDB0006270 CHEBI:75108 10-Keto-12Z-octadecenoic acid 24970825 Lactobacillus plantarum 1590 gm0405 species Linoelaidic acid 5282457 HMDB0006270 CHEBI:75108 10-Keto-12Z-octadecenoic acid 24970825 Lactobacillus plantarum 1590 gm0405 species Linoelaidic acid 5282457 HMDB0006270 CHEBI:75108 10-Keto-12Z-octadecenoic acid 24970825 Lactobacillus plantarum 1590 gm0405 species Linoelaidic acid 5282457 HMDB0006270 CHEBI:75108 10-Keto-12Z-octadecenoic acid 24970825 Lactobacillus plantarum 1590 gm0405 species Linoelaidic acid 5282457 HMDB0006270 CHEBI:75108 10-Keto-12Z-octadecenoic acid 24970825 Lactobacillus plantarum 1590 gm0405 species Linoelaidic acid 5282457 HMDB0006270 CHEBI:75108 10-Keto-12Z-octadecenoic acid 24970825 Lactobacillus plantarum 1590 gm0405 species Linoelaidic acid 5282457 HMDB0006270 CHEBI:75108 10-Keto-12Z-octadecenoic acid 24970825 Lactobacillus plantarum 1590 gm0405 species (Z)-10-Hydroxy-12-octadecenoic acid 46186046 10-Keto-12Z-octadecenoic acid 24970825 Lactobacillus plantarum 1590 gm0405 species (Z)-10-Hydroxy-12-octadecenoic acid 46186046 10-Keto-12Z-octadecenoic acid 24970825 Lactobacillus plantarum 1590 gm0405 species (Z)-10-Hydroxy-12-octadecenoic acid 46186046 10-Keto-12Z-octadecenoic acid 24970825 Lactobacillus plantarum 1590 gm0405 species (Z)-10-Hydroxy-12-octadecenoic acid 46186046 10-Keto-12Z-octadecenoic acid 24970825 Lactobacillus plantarum 1590 gm0405 species (Z)-10-Hydroxy-12-octadecenoic acid 46186046 10-Keto-12Z-octadecenoic acid 24970825 Lactobacillus plantarum 1590 gm0405 species (Z)-10-Hydroxy-12-octadecenoic acid 46186046 10-Keto-12Z-octadecenoic acid 24970825 Lactobacillus plantarum 1590 gm0405 species (Z)-10-Hydroxy-12-octadecenoic acid 46186046 10-Keto-12Z-octadecenoic acid 24970825 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Akkermansia muciniphila 239935 gm0030 species Acetate 175 CHEBI:30089 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Acetate 175 CHEBI:30089 Akkermansia muciniphila 239935 gm0030 species Acetate 175 CHEBI:30089 Akkermansia muciniphila 239935 gm0030 species Acetate 175 CHEBI:30089 Akkermansia muciniphila 239935 gm0030 species Acetate 175 CHEBI:30089 Akkermansia muciniphila 239935 gm0030 species Acetate 175 CHEBI:30089 Akkermansia muciniphila 239935 gm0030 species Acetate 175 CHEBI:30089 Akkermansia muciniphila 239935 gm0030 species Acetate 175 CHEBI:30089 Akkermansia muciniphila 239935 gm0030 species Acetate 175 CHEBI:30089 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Akkermansia muciniphila 239935 gm0030 species Propionate 104745 CHEBI:17272 Lactobacillus casei Shirota gm0953 strain Pipecolic acid 849 HMDB0000070 CHEBI:17964 Lactobacillus casei Shirota gm0953 strain Serotonin 5202 HMDB0000259 CHEBI:28790 Lactobacillus casei Shirota gm0953 strain Acetylcholine 187 HMDB0000895 CHEBI:15355 Clostridia 186801 gm0181 class Cholesterol 5997 HMDB0000067 CHEBI:16113 Estradiol 5757 HMDB0000151 CHEBI:16469 Clostridia 186801 gm0181 class Cholesterol 5997 HMDB0000067 CHEBI:16113 Estradiol 5757 HMDB0000151 CHEBI:16469 Lactiplantibacillus plantarum 1590 gm0856 species Linoleic acid 5280450 HMDB0000673 CHEBI:17351 (Z)-10-Hydroxy-12-octadecenoic acid 46186046 Lactiplantibacillus plantarum 1590 gm0856 species Linoleic acid 5280450 HMDB0000673 CHEBI:17351 (Z)-10-Hydroxy-12-octadecenoic acid 46186046 Lactiplantibacillus plantarum 1590 gm0856 species Linoleic acid 5280450 HMDB0000673 CHEBI:17351 (Z)-10-Hydroxy-12-octadecenoic acid 46186046 Lactiplantibacillus plantarum 1590 gm0856 species Linoleic acid 5280450 HMDB0000673 CHEBI:17351 (Z)-10-Hydroxy-12-octadecenoic acid 46186046 Lactiplantibacillus plantarum 1590 gm0856 species Linoleic acid 5280450 HMDB0000673 CHEBI:17351 (Z)-10-Hydroxy-12-octadecenoic acid 46186046 Lactiplantibacillus plantarum 1590 gm0856 species Linoleic acid 5280450 HMDB0000673 CHEBI:17351 (Z)-10-Hydroxy-12-octadecenoic acid 46186046 Lactiplantibacillus plantarum 1590 gm0856 species Linoleic acid 5280450 HMDB0000673 CHEBI:17351 (Z)-10-Hydroxy-12-octadecenoic acid 46186046 Lactiplantibacillus plantarum 1590 gm0856 species Linoleic acid 5280450 HMDB0000673 CHEBI:17351 (Z)-10-Hydroxy-12-octadecenoic acid 46186046 Lactiplantibacillus plantarum 1590 gm0856 species Linoleic acid 5280450 HMDB0000673 CHEBI:17351 (Z)-10-Hydroxy-12-octadecenoic acid 46186046 Lactiplantibacillus plantarum 1590 gm0856 species Linoleic acid 5280450 HMDB0000673 CHEBI:17351 (Z)-10-Hydroxy-12-octadecenoic acid 46186046 Clostridium sporogenes 1509 gm0710 species 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Clostridium sporogenes 1509 gm0710 species 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Clostridium sporogenes 1509 gm0710 species 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Clostridium sporogenes 1509 gm0710 species 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Clostridium sporogenes 1509 gm0710 species 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Clostridium sporogenes 1509 gm0710 species 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Enterococcus faecalis 1351 gm0288 species N-Trimethyllysine 440121 N,N,N-trimethyl-5-aminovaleric acid Pseudomonas aeruginosa 287 gm0551 species N-Trimethyllysine 440121 N,N,N-trimethyl-5-aminovaleric acid Parabacteroides sp. HGS0025 1078087 gm1093 species Butyrate 104775 CHEBI:17968 Bifidobacterium longum 216816 gm0112 species 5-Acetamido-2-azaniumylpentanoate 121596237 CHEBI:133180 Bacteroides thetaiotaomicron BT1492 gm1094 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Bacteroides ovatus BACOVA_04222 gm1095 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Lactobacillus 1578 gm0393 genus Linolenic acid 5280934 CHEBI:27432 13-hydroxy-9(Z),15(Z)-octadecadienoic acid Lactobacillus 1578 gm0393 genus Linolenic acid 5280934 CHEBI:27432 13-oxo-9(Z),15(Z)-octadecadienoic acid Akkermansia muciniphila ATCC BAA-835 349741 gm0951 strain Nicotinamide 936 CHEBI:17154 Akkermansia muciniphila ATCC BAA-2869 gm1112 strain Nicotinamide 936 CHEBI:17154 Clostridium butyricum WZMC1016 gm1115 strain Butyrate 104775 CHEBI:17968 Ruminococcus gnavus 33038 gm0592 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Tryptamine 1150 HMDB0000303 CHEBI:16765 Clostridium sporogenes 1509 gm0710 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Tryptamine 1150 HMDB0000303 CHEBI:16765 Clostridium butyricum CGMCC0313.1 gm1122 strain Butyrate 104775 CHEBI:17968 Lactobacillus acidophilus ATCC 4356 gm1124 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Lactobacillus acidophilus ATCC 4356 gm1124 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Lactobacillus acidophilus ATCC 4356 gm1124 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Lactobacillus acidophilus ATCC 4356 gm1124 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Lactobacillus acidophilus ATCC 4356 gm1124 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Lactobacillus acidophilus ATCC 4356 gm1124 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Lactobacillus acidophilus ATCC 4356 gm1124 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Lactobacillus acidophilus ATCC 4356 gm1124 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Lactobacillus acidophilus ATCC 4356 gm1124 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Lactobacillus acidophilus ATCC 4356 gm1124 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 391904 gm0910 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 391904 gm0910 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 391904 gm0910 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 391904 gm0910 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 391904 gm0910 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 391904 gm0910 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 391904 gm0910 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 391904 gm0910 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 391904 gm0910 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Bifidobacterium longum subsp. infantis ATCC 15697 = JCM 1222 = DSM 20088 391904 gm0910 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Enterococcus faecalis ATCC 19433 1169286 gm1125 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Enterococcus faecalis ATCC 19433 1169286 gm1125 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Enterococcus faecalis ATCC 19433 1169286 gm1125 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Enterococcus faecalis ATCC 19433 1169286 gm1125 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Enterococcus faecalis ATCC 19433 1169286 gm1125 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Enterococcus faecalis ATCC 19433 1169286 gm1125 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Enterococcus faecalis ATCC 19433 1169286 gm1125 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Enterococcus faecalis ATCC 19433 1169286 gm1125 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Enterococcus faecalis ATCC 19433 1169286 gm1125 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Enterococcus faecalis ATCC 19433 1169286 gm1125 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Escherichia coli ATCC 44102 gm1126 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Escherichia coli ATCC 44102 gm1126 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Escherichia coli ATCC 44102 gm1126 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Escherichia coli ATCC 44102 gm1126 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Escherichia coli ATCC 44102 gm1126 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Escherichia coli ATCC 44102 gm1126 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Escherichia coli ATCC 44102 gm1126 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Escherichia coli ATCC 44102 gm1126 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Escherichia coli ATCC 44102 gm1126 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Escherichia coli ATCC 44102 gm1126 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Pseudomonas aeruginosa ATCC 9027 gm1127 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Pseudomonas aeruginosa ATCC 9027 gm1127 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Pseudomonas aeruginosa ATCC 9027 gm1127 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Pseudomonas aeruginosa ATCC 9027 gm1127 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Pseudomonas aeruginosa ATCC 9027 gm1127 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Pseudomonas aeruginosa ATCC 9027 gm1127 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Pseudomonas aeruginosa ATCC 9027 gm1127 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Pseudomonas aeruginosa ATCC 9027 gm1127 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Pseudomonas aeruginosa ATCC 9027 gm1127 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Pseudomonas aeruginosa ATCC 9027 gm1127 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Staphylococcus aureus ATCC 26003 gm1128 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Staphylococcus aureus ATCC 26003 gm1128 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Staphylococcus aureus ATCC 26003 gm1128 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Staphylococcus aureus ATCC 26003 gm1128 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Staphylococcus aureus ATCC 26003 gm1128 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Staphylococcus aureus ATCC 26003 gm1128 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Staphylococcus aureus ATCC 26003 gm1128 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Staphylococcus aureus ATCC 26003 gm1128 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Staphylococcus aureus ATCC 26003 gm1128 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 Staphylococcus aureus ATCC 26003 gm1128 strain Berberine 2353 HMDB0003409 CHEBI:16118 Oxyberberine 11066 do03 gm0739 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Enterorhabdus mucosicola Mt1B8 gm1159 strain Genistein 5280961 HMDB0003217 CHEBI:28088 5-OH-Equol 9795113 Enterorhabdus mucosicola Mt1B8 gm1159 strain Daidzein 5281708 HMDB0003312 CHEBI:28197 Equol 91469 HMDB0002209 CHEBI:34741 Enterorhabdus mucosicola Mt1B8 gm1159 strain Dihydrodaidzein 176907 HMDB0005760 CHEBI:75842 Equol 91469 HMDB0002209 CHEBI:34741 Enterorhabdus mucosicola Mt1B8 gm1159 strain Dihydrogenistein 9838356 HMDB0005897 CHEBI:34707 5-OH-Equol 9795113 Lactiplantibacillus plantarum 1590 gm1160 species 3-Dehydroshikimate 439774 CHEBI:16630 Gallic acid 370 HMDB0005807 CHEBI:30778 Lactiplantibacillus plantarum 1590 gm1160 species 3-Dehydroshikimate 439774 CHEBI:16630 Gallic acid 370 HMDB0005807 CHEBI:30778 Lactiplantibacillus plantarum 1590 gm1160 species 3-Dehydroshikimate 439774 CHEBI:16630 Gallic acid 370 HMDB0005807 CHEBI:30778 Lactiplantibacillus plantarum 1590 gm1160 species 3-Dehydroshikimate 439774 CHEBI:16630 Gallic acid 370 HMDB0005807 CHEBI:30778 Lactiplantibacillus plantarum 1590 gm1160 species 3-Dehydroshikimate 439774 CHEBI:16630 Gallic acid 370 HMDB0005807 CHEBI:30778 Lactiplantibacillus plantarum 1590 gm1160 species 3-Dehydroshikimate 439774 CHEBI:16630 Gallic acid 370 HMDB0005807 CHEBI:30778 Bacillus subtilis 1423 gm0070 species 3-Dehydroshikimate 439774 CHEBI:16630 Gallic acid 370 HMDB0005807 CHEBI:30778 Bacillus subtilis 1423 gm0070 species 3-Dehydroshikimate 439774 CHEBI:16630 Gallic acid 370 HMDB0005807 CHEBI:30778 Bacillus subtilis 1423 gm0070 species 3-Dehydroshikimate 439774 CHEBI:16630 Gallic acid 370 HMDB0005807 CHEBI:30778 Bacillus subtilis 1423 gm0070 species 3-Dehydroshikimate 439774 CHEBI:16630 Gallic acid 370 HMDB0005807 CHEBI:30778 Bacillus subtilis 1423 gm0070 species 3-Dehydroshikimate 439774 CHEBI:16630 Gallic acid 370 HMDB0005807 CHEBI:30778 Bacillus subtilis 1423 gm0070 species 3-Dehydroshikimate 439774 CHEBI:16630 Gallic acid 370 HMDB0005807 CHEBI:30778 Escherichia coli 562 gm0305 species Phytic acid 890 HMDB0003502 CHEBI:17401 1D-Myo-inositol 6-phosphate 161368 CHEBI:64838 Faecalibacterium prausnitzii 853 gm0327 species Butyrate 104775 CHEBI:17968 Escherichia coli 562 gm0305 species [(1S,2R,3S,4S,5R,6S)-2,3,5-Trihydroxy-4,6-diphosphonooxycyclohexyl] dihydrogen phosphate 55310 Escherichia coli 562 gm0305 species 1D-Myo-inositol 1,4,5,6-tetrakisphosphate(8-) 25201642 HMDB0004527 CHEBI:57627 Corynebacterium glutamicum 1718 gm1161 species Glutamic acid 33032 HMDB0000148 CHEBI:16015 D-Glutamic acid 23327 HMDB0003339 CHEBI:15966 Brevibacterium avium 83828 gm1162 species Glutamic acid 33032 HMDB0000148 CHEBI:16015 D-Glutamic acid 23327 HMDB0003339 CHEBI:15966 Mycolicibacterium smegmatis 1772 gm1164 species Glutamic acid 33032 HMDB0000148 CHEBI:16015 D-Glutamic acid 23327 HMDB0003339 CHEBI:15966 Bacillus subtilis 1423 gm0070 species Glutamic acid 33032 HMDB0000148 CHEBI:16015 D-Glutamic acid 23327 HMDB0003339 CHEBI:15966 Corynebacteriaceae 1653 gm0232 family D-Glutamic acid 23327 HMDB0003339 CHEBI:15966 Lactiplantibacillus plantarum 1590 gm1160 species D-Glutamic acid 23327 HMDB0003339 CHEBI:15966 Lactococcus lactis 1358 gm0719 species D-Glutamic acid 23327 HMDB0003339 CHEBI:15966 Lacticaseibacillus paracasei 1597 gm1163 species D-Glutamic acid 23327 HMDB0003339 CHEBI:15966 Clostridium scindens 29347 gm0208 species Bile acid 439520 CHEBI:22868 Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Clostridium scindens 29347 gm0208 species Bile acid 439520 CHEBI:22868 Deoxycholic acid 222528 HMDB0000626 CHEBI:28834 Ligilactobacillus murinus 1622 gm1166 species Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Bacteroides fragilis YCH46 295405 gm1165 strain Arachidonic acid 444899 HMDB0001043 CHEBI:15843 Bacteroides fragilis YCH46 295405 gm1165 strain Arachidonic acid 444899 HMDB0001043 CHEBI:15843 Bacteroides fragilis YCH46 295405 gm1165 strain Arachidonic acid 444899 HMDB0001043 CHEBI:15843 Bacteroides fragilis YCH46 295405 gm1165 strain Arachidonic acid 444899 HMDB0001043 CHEBI:15843 Eubacteriales 186802 gm1168 order Tryptophan 6305 HMDB0000929 CHEBI:16828 Desulfovibrionaceae 194924 gm0259 family Tryptophan 6305 HMDB0000929 CHEBI:16828 Akkermansia 239934 gm0029 genus Tryptophan 6305 HMDB0000929 CHEBI:16828 Escherichia coli BW25113 679895 gm0895 strain Tryptophan 6305 HMDB0000929 CHEBI:16828 Indole 798 HMDB0000738 CHEBI:16881 Akkermansia 239934 gm0029 genus 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Akkermansia 239934 gm0029 genus 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Akkermansia 239934 gm0029 genus 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Akkermansia 239934 gm0029 genus 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Clostridium 1485 gm0187 genus 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Clostridium 1485 gm0187 genus 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Clostridium 1485 gm0187 genus 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Clostridium 1485 gm0187 genus 3-Indolepropionic acid 3744 HMDB0002302 CHEBI:43580 Bifidobacterium 1678 gm0105 genus Stachyose 439531 HMDB0003553 CHEBI:17164 Acetate 175 CHEBI:30089 Bifidobacterium 1678 gm0105 genus Stachyose 439531 HMDB0003553 CHEBI:17164 Propionate 104745 CHEBI:17272 Lactobacillus 1578 gm0393 genus Stachyose 439531 HMDB0003553 CHEBI:17164 Acetate 175 CHEBI:30089 Lactobacillus 1578 gm0393 genus Stachyose 439531 HMDB0003553 CHEBI:17164 Propionate 104745 CHEBI:17272